Closed

Emerging and future risks to plant health

HORIZON Research and Innovation Actions

Basic Information

Identifier
HORIZON-CL6-2025-02-FARM2FORK-01-two-stage
Programme
Cluster 6 Call 02 - two stage
Programme Period
2021 - 2027
Status
Closed (31094503)
Opening Date
May 6, 2025
Deadline
September 4, 2025
Deadline Model
two-stage
Budget
€12,000,000
Min Grant Amount
€6,000,000
Max Grant Amount
€6,000,000
Expected Number of Grants
2
Keywords
HORIZON-CL6-2025-02-FARM2FORK-01-two-stageHORIZON-CL6-2025-02-two-stageAgricultureAgriculture related to crop production, soil biology and cultivation, applied plant biologyAgronomyPhytopathologyPlant breeding and plant protectionPlant diseasesPlant pestsPlant viruses

Description

Expected Outcome:

Successful proposals should contribute to the objectives of the common agricultural policy, as well as to the European Green Deal’s goals for resilient and sustainable agri-food systems, the EU biodiversity strategy for 2030, and support Regulation 2016/2031[1] on protective measures against pests of plants.

Successful proposals will deliver on the expected impacts of the destination by enabling agri-food systems to enhance the EU’s strategic autonomy through promoting food security and long-term sustainability with multidisciplinary approaches, including One Health. They will also empower farmers and key actors in the agricultural sector to manage sustainable, efficient, profitable, and circular farming systems with low greenhouse gas emissions, contributing to climate-neutrality and resilience.

Project results are expected to contribute to all of the following expected outcomes:

  • the understanding of drivers of plant pest emergence, including the influence of climate change, ecosystem degradation and globalisation, is increased;
  • cost-effective preventive and/or curative measures to new and/or emerging plant pests are developed;
  • economic, social, and environmentally sound solutions for effective pest management in farming and/or forestry in line with the principles of integrated pest management are developed;
  • scientific support, recommendations, and policy advice are provided to strengthen plant health policies.
Scope:

Plant health is crucial for agriculture, forestry, ecosystems, ecosystem services and biodiversity on a global scale. The current EU plant health legislative framework plays a vital role in protecting the EU from the introduction of new plant pests and as well as tackling existing plant pests more effectively. Maintaining healthy crops is increasingly challenging due to factors like climate change, biodiversity loss, globalisation, and international trade which accelerate the spread of pests and diseases. These threats can severely damage crops, native plants, and the environment, jeopardising agricultural sustainability, biodiversity, and food security.

To address these issues, proposals should target one or more new or emerging plant pests[2] (regulated, non-regulated, introduced or native) that are causing or likely to cause, significant socio-economic and/or environmental impact to agriculture and/or forestry in the EU and/or Associated Countries, well as the impact on trade and the wider environment, including soil and water, considering potential exacerbation under climate change[3]. Within the scope of this topic are pests exhibiting an altered and higher probability of entry, establishment and spread in a new area that might be the result of changes in their biology or changes in agriculture or forestry pest management practice or rapid spread in new areas.

Proposals should:

  • enhance understanding of pest(s) biology, introduction pathways, interaction with crop-soil ecosystems (if relevant), and mechanisms of spread, especially considering the challenges posed by climate change, biodiversity crisis, land use, and globalisation, thereby reducing uncertainties and lack of data in pest risk assessments;
  • develop rapid and cost-effective tools and methods for preventing pest(s) entry, spread, and establishment; this includes early detection, surveillance, treatment[4], and (bio)control measures (including innovative agro-ecological practices), in line with sustainable and integrated pest management;
  • assess the social, economic, and environmental impacts of plant pest(s) establishment and spread on farmers and/or forest owners and develop strategies to mitigate these impacts effectively;
  • contribute to the identification of resistant and/or tolerant traits and explore agro-ecological processes as tools for pests regulation, enhancing the resilience and long-term sustainability of the sector;
  • foster a holistic understanding and management of plant pests following a One Health approach, recognising the interconnection between people, animals, plants and their shared environment.

International cooperation with countries affected or threatened by the same pest(s) is strongly encouraged.

Proposals must implement the ‘multi-actor approach’ including a range of actors to ensure that knowledge and needs from various sectors such as research, plant health services, farming/forestry sectors, advisory services, and industry are brought together.

Results should benefit diverse farming systems/approaches, including conventional and organic farming.

Proposals may provide financial support to third parties (FSTP) to, for instance, develop, test and demonstrate tools and methods for early detection, surveillance, treatment, and (bio)control measures. A maximum of 10% of the EU funding should be allocated to this purpose. Consortia need to define the selection process of organisations, for which financial support may be granted.

Proposals are encouraged to consider, where relevant, the services offered by European research infrastructures and accredited laboratories [5].

Proposals should ensure coherence and complementarities with ongoing relevant Horizon Europe projects and capitalise on existing relevant research findings and tools, included those developed under previous research projects.

The proposals should include a dedicated task in the workplan and appropriate resources to collaborate with the projects funded under this topic.

[1] https://eur-lex.europa.eu/eli/reg/2016/2031/oj

[2] A pest is defined here as any species, strain or biotype of plant, animal or pathogenic agent injurious to plants or plant products (EU legislation, Regulation 2016/2031).

[3] Applicants are expected to explain and justify the choice of pest(s) in alignment with the proposal’s objectives and the topic’s expected outcomes.

[4] See IPPC Secretariat. 2024. Glossary of phytosanitary terms. International Standard for Phytosanitary Measures No. 5. Rome. FAO on behalf of the Secretariat of the International Plant Protection Convention.

[5] The catalogue of European Strategy Forum on Research Infrastructures (ESFRI) research infrastructures portfolio can be browsed from ESFRI website https://ri-portfolio.esfri.eu/.

Destination & Scope

Food systems are to be understood as covering, ‘from the farm to the fork’, all the sectors, actors, stakeholders, organisations and disciplines relevant to and connecting natural resources, primary production from land, fresh water and sea, food processing, food distribution and retailing, food services, food consumption, healthy diets, food safety, nutrition and public health, and the prevention of food waste streams i.e. actors operating in the food supply circuit, working directly ‘with’ food. It also comprises actors that operate ‘around’ food at the broader food system level: governance, finance, education, media and culture, research, marketing and advertising, operational services and those representing business and professional interests. The Vision on agriculture and food and the Competitiveness compass will address challenges ensuring the long-term competitiveness and sustainability of the Agri-food sector within planetary boundaries. The EU Green Deal and more specifically its competitive, resilient and sustainable food system goals, the biodiversity strategy, the zero pollution and climate action ambitions, and their follow-up initiatives set ambitious targets and objectives for food systems will continue to guide research and innovation programming under this destination. Food system related policies cover an array of diverse areas. While those policy areas are interconnected, they cover specific sectors and actors along the food system that have distinct research and innovation needs to be addressed through this destination.

Sustainable farming systems provide economic, social (including health), environmental and climate benefits, and are the main prerequisite for food and nutrition security. For farmers, who are the backbone of food systems and principal managers of natural resources, the common agricultural policy (CAP) set ambitious targets and objectives concerning the sustainability and safety of feed, food and non-food production. R&I in line with the strategic approach to EU agricultural research and innovation[1] will be key enablers for achieving these ambitious targets and objectives. More specifically, they will contribute to the following policy priorities: nine specific objectives of the CAP; EU action plan for the development of organic production; food safety regulations; sustainable use of pesticides requirements under the plant protection products framework; animal health and welfare legislations; regulation on feed additives; legislative and non-legislative initiatives to enhance cooperation of primary producers and support their position in the food chain; protein strategy; contingency plan for ensuring food supply and food security and communications on food security and fertilisers.

The partnerships on ‘Accelerating farming systems transition: agroecology living labs and research infrastructures’ will continue to unlock the potential of agroecology to make agri-food systems environmentally friendly and regenerative, climate-neutral, inclusive, competitive and resilient.

Through the partnership onAnimal health and welfare’, farmers and other actors will continue to be better equipped to protect animals against infectious diseases, including zoonoses, and to improve animal welfare, while reducing the dependency on antimicrobials, maintaining productivity, improving food safety and quality, and protecting the environment and public health.

Sustainable fisheries and aquaculture, as mentioned in the 2023 common fisheries policy (CFP) communication, contribute to securing a wide variety of food and provide employment in many coastal communities. On top, the goal of the European Green Deal is ensuring a neutral or positive environmental impact of all sectors involved in the food system. The European Oceans Pact will focus on boosting the blue economy and ensuring the good governance and sustainability of our ocean in all of its dimensions. The CFP of the future is a policy that enables and supports: (i) fisheries and aquaculture activities within ecological boundaries, including organic aquaculture; (ii) fishing vessels and aquaculture farms that operate with less impact and fewer resources; (iii) the contribution of seafood to safeguarding food security and reinforcing the resilience and sustainability of food systems in the EU; as well as (iv) fishers and aquaculture farmers who can find fulfilment, recognition and economic well-being in their profession. Additionally, the Control Regulation clearly mentions that traceability is important not only for food safety purposes but also to allow control, ensure the protection of consumers’ interests, combat illegal, unreported and unregulated fishing, and contribute to ensuring fair competition. R&I will also support the “strategic guidelines for a more sustainable and competitive EU aquaculture for the period 2021 to 2030”, that propose specific actions including access to space and water, human and animal health, environmental performance, climate change, animal welfare, regulatory and administrative framework, and communicating on EU aquaculture. Moreover, R&I in fisheries and aquaculture will contribute to the relevant Food 2030 pathway for action ‘food from oceans and freshwater resources’.

Sustainable, healthy and inclusive food systems rely on systemic, cross-sectoral and participatory, multi-actor approaches and on integration between policy areas at all levels of governance. An important driver for transforming food systems should be the integration of sectors, actors and policies[2]. This should occur in order to better understand the multiple interactions between the actors and components of current food systems, the lock-ins and potential leverage points for synergistic changes and the interdependencies of outcomes (linkages between nutritional climate and sustainability outcomes). This can provide solutions that maximise co-benefits with respect to the four priorities of the Food 2030 R&I initiative: i) nutrition and health, including food safety; ii) climate and environmental sustainability; iii) circularity and resource efficiency; iv) innovation and empowering communities.

This destination will deploy solutions to the 11 Food 2030 pathways for action[3] and will help build innovation ecosystems to bring together relevant public and private sector actors, researchers and society. R&I I activities (including at organisational, social or technological levels) will provide food-related businesses, including those involved in food processing and packaging, retail, distribution, and food services, with opportunities and incentives to stimulate environmentally friendly, healthy, circular and diversified practices, products and processes that are biodiversity-friendly, climate-neutral and less reliant on fossil fuels. It will also help devise tools and approaches that enable the shift to healthy, sustainable diets and responsible consumption for everyone, boosted also by social innovation, technology, behavioural change and marketing standards, and by inclusively engaging with different consumers, citizens and communities. This will support the announced future EU vision for agriculture and food and the multi-disciplinary strategy for European life sciences that should further unlock high-value technologies in support of the green transition, and also contribute to the communication “Building the future with nature: Boosting Biotechnology and Biomanufacturing in the EU” and the forthcoming new EU biotech act.

The partnership on ‘Sustainable food systems for people, planet and climate’ will continue to accelerate the transition towards healthy and sustainable diets that are safe and sustainably produced in resilient EU and global food systems.

The EU also aims to promote a global transition to sustainable food systems. Its relationship with Africa is a key priority. Targeted R&I activities, in particular under the EU-Africa Partnership on Food and Nutrition Security and Sustainable Agriculture (FNSSA) and global initiatives involving international research consortia, will help achieve this ambition and contribute to the AU-EU High Level Policy Dialogue (HLPD) on Science, Technology and Innovation.

A comprehensive and integrated response to current and future challenges benefiting people, nature and economic growth in Europe and in Africa will be provided. Advances will be made particularly in the following key areas: agroecology, agriculture knowledge and innovation systems and nutrition.

Topic proposals under this destination should set out credible paths to “ensuring healthy food and nutrition security by making agriculture, fisheries, aquaculture and food systems sustainable, resilient, inclusive and within planetary boundaries”. More specifically, proposed topics should contribute to one or more of the following impacts:

  • Agri-food systems contribute to the EU strategic autonomy by fostering food and nutrition security practices and safeguarding long-term sustainability with multi-disciplinary approaches including One Health.
  • Farmers and relevant actors in agricultural primary sector are enabled to manage sustainable, efficient, profitable, circular, low greenhouse gas-emitting farming systems contributing to climate-neutrality and climate-resilience. This will be achieved by new knowledge, innovation and the upscaling and replication of existing and new sustainable farming approaches, including organic farming, while making farming a professionally attractive and remunerative life choice.
  • Sustainable and resource efficient farming practices contribute to ecosystems´ health, and their related ecosystem services, while minimising pollution, including in surface and groundwaters and the marine environment, and restoring and protecting biodiversity.
  • Sustainable fisheries and aquaculture (including organic aquaculture) contribute to fair, healthy, resilient and environment-friendly food systems, promote low-impact and diverse aquatic food production. Healthy aquatic ecosystems with thriving diversity of species and habitats provide ecosystem and climate services for safe and sustainable fisheries and aquaculture and use of coastal zones for leisure activities, thus triggering growth and jobs’ creation in coastal, and rural areas. Technological knowledge on the elimination of negative impacts of fishing and aquaculture is improved, in particular through the creation of innovative, more selective, energy and resource efficient and environmentally sustainable techniques.
  • The just transition to overall sustainable, healthy and inclusive food systems[4] is consistently developed. Analysis of existing barriers and enablers to change allows to design effective leverages to steer the sustainability transition. Co-benefits for climate change mitigation and adaptation, environmental sustainability and circularity, sustainable healthy diets, malnutrition and hunger reduction are delivered.
  • Food environments are transformed so that citizens and communities are empowered to move towards healthy, affordable and sustainable diets; food businesses can flourish; food processing industries’ competitiveness is improved, while ensuring sustainability; food safety and food sovereignty as well as human health is preserved and food waste is reduced.

To unlock the full potential of R&I and maximise impacts of the expected outcomes, multi-actor and socially innovative approaches (involving the engagement of researchers, policy makers, technology providers, primary producers, the food, drink and hospitality industry, retailers and social economy actors, SMEs along the value chain, local authorities and communities, NGO and civil society, while considering gender and other socio demographic groups and their intersections etc.), open innovation ecosystems, such as living labs and regional innovation ecosystems such as Regional Innovation Valleys for Bioeconomy and Food Systems[5], will be promoted with a view to co-creating innovative systemic place-based solutions in support of food system sustainability. Activities will benefit from the implementation of unifying approaches through R&I, including the One Health approach where relevant.

To effectively transition innovations into the market, SMEs participation is particularly promoted under this destination. Topics under this destination should be balanced in terms of high as well as low Technological Readiness Levels (TRLs).

R&I actions under this destination are encouraged to seek complementarities with the EU Missions ‘A Soil Deal for Europe’ and ‘Restore our Ocean and Waters by 2030’ as well as with the European partnerships on Agroecology, Animal Health and Welfare, Sustainable Blue Economy, Sustainable Food Systems for people, planet and climate, and Agriculture of Data (forthcoming), the Partnership for Research and Innovation in the Mediterranean areas (PRIMA) and importantly the European innovation Partnership for Agriculture productivity and sustainability (EIP-AGRI).

The EU will seek to increase the efforts on innovation actions for food systems sustainability in widening countries, reaching out to EU outermost regions and to countries in Central and Eastern Europe, also in preparation for the next EU enlargement.

To maximise the impacts of R&I under this destination, the topics encourage international cooperation as appropriate. The EU will promote a global transition to sustainable agri-food systems. Hence, targeted R&I activities in 2025, in particular under the EU-Africa Partnership on Food and Nutrition Security and Sustainable Agriculture (FNSSA) as well as other initiatives involving international research consortia and already running international activities, will contribute to this ambition.

Coordination will be ensured with the JRC activities under the EC Knowledge Centre for Bioeconomy, the EU Soil Observatory, the European Platform on Life Cycle Assessment, the EC Knowledge Centre for Earth Observation, the Knowledge Centre for Food Fraud and Quality, and the JRC secretariat for the Scientific, Technical and Economic Committee for Fisheries.

To be more effective in achieving impact, this Destination encourages synergies with relevant EU financial programmes and initiatives including the Knowledge and Innovation Communities (KICs) of the European Institute of Innovation and Technology (EIT), in particular EIT Food, and international cooperation programmes (e.g., DeSIRA).

The multi-actor approach is used in several topics. Relevant topics under this destination also require the integration of Social Sciences and Humanities (SSH) to apply a human-centred approach to R&I, and support social innovation at regional and local level to meet needs and co-create solutions for specific challenges.

[1] https://ec.europa.eu/programmes/horizon2020/en/news/final-paper-strategic-approach-eu-agricultural research-and-innovation

[2] Scientific Advice Mechanism, Towards a sustainable food system - Publications Office of the EU (europa.eu)

[3] New Report: Food 2030 Research and Innovation – Pathways for action 2.0 - European Commission (europa.eu)

[4] Sustainable food systems: Concept and framework (fao.org)

[5] Concept of Regional Innovation Valleys for Bioeconomy and Food Systems

Eligibility & Conditions

General conditions

1. Admissibility Conditions: Proposal page limit and layout

Applicants submitting a proposal under the blind evaluation pilot (see General Annex F) must not disclose their organisation names, acronyms, logos nor names of personnel in the proposal abstract and Part B of their first-stage application (see General Annex E).

described in Annex A and Annex E of the Horizon Europe Work Programme General Annexes.

Proposal page limits and layout: described in Part B of the Application Form available in the Submission System.

2. Eligible Countries

described in Annex B of the Work Programme General Annexes.

A number of non-EU/non-Associated Countries that are not automatically eligible for funding have made specific provisions for making funding available for their participants in Horizon Europe projects. See the information in the Horizon Europe Programme Guide.

3. Other Eligible Conditions

The following additional eligibility criteria apply: The proposals must apply the multi-actor approach. See definition of the multi-actor approach in the introduction to this work programme part.

described in Annex B of the Work Programme General Annexes.

4. Financial and operational capacity and exclusion

described in Annex C of the Work Programme General Annexes.

5a. Evaluation and award: Award criteria, scoring and thresholds

This topic is part of the blind evaluation pilot under which first stage proposals will be evaluated blindly.

are described in Annex D of the Work Programme General Annexes.

5b. Evaluation and award: Submission and evaluation processes

are described in Annex F of the Work Programme General Annexes and the Online Manual.

5c. Evaluation and award: Indicative timeline for evaluation and grant agreement

described in Annex F of the Work Programme General Annexes.

6. Legal and financial set-up of the grants

Eligible costs will take the form of a lump sum as defined in the Decision of 7 July 2021 authorising the use of lump sum contributions under the Horizon Europe Programme – the Framework Programme for Research and Innovation (2021-2027) – and in actions under the Research and Training Programme of the European Atomic Energy Community (2021-2025) [[This decision is available on the Funding and Tenders Portal, in the reference documents section for Horizon Europe, under ‘Simplified costs decisions’ or through this link: https://ec.europa.eu/info/funding-tenders/opportunities/docs/2021-2027/horizon/guidance/ls-decision_he_en.pdf]].

Beneficiaries may provide financial support to third parties. The support to third parties can only be provided in the form of grants. The maximum amount to be granted to each third party is EUR 60 000.

described in Annex G of the Work Programme General Annexes.

Specific conditions

described in the [specific topic of the Work Programme]

Support & Resources

Online Manual is your guide on the procedures from proposal submission to managing your grant.

Horizon Europe Programme Guide contains the detailed guidance to the structure, budget and political priorities of Horizon Europe.

Funding & Tenders Portal FAQ – find the answers to most frequently asked questions on submission of proposals, evaluation and grant management.

Research Enquiry Service – ask questions about any aspect of European research in general and the EU Research Framework Programmes in particular.

National Contact Points (NCPs) – get guidance, practical information and assistance on participation in Horizon Europe. There are also NCPs in many non-EU and non-associated countries (‘third-countries’).

Enterprise Europe Network – contact your EEN national contact for advice to businesses with special focus on SMEs. The support includes guidance on the EU research funding.

IT Helpdesk – contact the Funding & Tenders Portal IT helpdesk for questions such as forgotten passwords, access rights and roles, technical aspects of submission of proposals, etc.

European IPR Helpdesk assists you on intellectual property issues.

CEN-CENELEC Research Helpdesk and ETSI Research Helpdesk – the European Standards Organisations advise you how to tackle standardisation in your project proposal.

The European Charter for Researchers and the Code of Conduct for their recruitment – consult the general principles and requirements specifying the roles, responsibilities and entitlements of researchers, employers and funders of researchers.

Partner Search help you find a partner organisation for your proposal.

Latest Updates

Last Changed: September 16, 2025

Flash information on proposal numbers

The first stage of call HORIZON-CL6-2025-02-two-stage call has closed on 04/09/2025.

229 proposals have been submitted.

The breakdown per topic is:

HORIZON-CL6-2025-02-CLIMATE-01-two-stage: 42 proposals

HORIZON-CL6-2025-02-FARM2FORK-01-two-stage: 41 proposals

HORIZON-CL6-2025-02-FARM2FORK-02-two-stage: 24 proposals

HORIZON-CL6-2025-02-FARM2FORK-03-two-stage: 25 proposals

HORIZON-CL6-2025-02-FARM2FORK-04-two-stage: 28 proposals

HORIZON-CL6-2025-02-FARM2FORK-05-two-stage: 69 proposals

Evaluation results are expected to be communicated in December 2025.

Last Changed: June 11, 2025

Please note that due to a technical issue, during the first days of publication of this call, the topic page did not display the description of the corresponding destination. This problem is now solved. In addition to the information published in the topic page, you can always find a full description of the 7 destinations (Biodiversity and ecosystem services; Fair, healthy and environment-friendly food systems from primary production to consumption; Circular economy and bioeconomy sectors; Clean environment and zero pollution; Land, ocean and water for climate action; Resilient, inclusive, healthy and green rural, coastal and urban communities; Innovative governance, environmental observations and digital solutions in support of the Green Deal) that are relevant for the call in the Work Programme 2025 part for “Food, Bioeconomy, Natural Resources, Agriculture and Environment”. Please select from the work programme the destination relevant to your topic and take into account the description and expected impacts of that destination for the preparation of your proposal.

Last Changed: May 6, 2025
The submission session is now available for: HORIZON-CL6-2025-02-FARM2FORK-04-two-stage, HORIZON-CL6-2025-02-FARM2FORK-03-two-stage, HORIZON-CL6-2025-02-CLIMATE-01-two-stage, HORIZON-CL6-2025-02-FARM2FORK-05-two-stage, HORIZON-CL6-2025-02-FARM2FORK-01-two-stage, HORIZON-CL6-2025-02-FARM2FORK-02-two-stage
Emerging and future risks to plant health | Grantalist